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Data Sets
Single Cell Methylation – Small Kit – Mouse Nuclei – 4.2K
Report Summary:
Download run summary reports (1.67 MB): scMET_Small_Mouse Nuclei_4.2K_Summary
Access the secondary analysis Amethyst tutorial – Clustering & Annotation (Jupyter notebook)*: ScaleMethyl-Brain-Amethyst_v1.3.0.ipynb
*Jupyter installation required
Product Information:
Scale Bio Methylation Kit v1.0
Scale Bio Seq Suite: scMethylation v1.3
Scale Bio Seq Suite Methylation Handbook_RevB
Sample Information:
Sample format: mouse brain tissue (OCT slices)
Species: Mouse
Sample/Cell Type: Brain; Vizgen Brain Nuclei
Cells in dataset: 4,288
Sequencing Information:
Sequencing platform: NovaSeq 6000
Flow Cell: S4
Mean passing reads per cell: 2,002,496